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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150099485_150102538_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150099485 - 150102538
Intron Length:
3054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTTTCATCT
Flanking Amino Acid:
MFPGTPLQPVPTFPVGPTIG
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
55.2
0.24
1.8
76.37
40.5

Associated Gene:

Gene:
MBNL2
Ensembl Gene ID:
ENSAPLG00000024891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019959
150065285 - 150129140
63856
ENSAPLT00000017721
150065285 - 150129140
63856
ENSAPLT00000048532
150065285 - 150129027
63743
ENSAPLT00000042097
150065285 - 150129027
63743
ENSAPLT00000035024
150065285 - 150129140
63856