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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150102740_150103605_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150102740 - 150103605
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGTGG
5'SS Class:
major
3'SS Sequence:
GTTTTGCACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
TTGTTTTGCACG
Flanking Amino Acid:
QKLLRTDKLEVCREFQRGNC
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
55.9
43.6
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
67.7
0.4
1
62.9
38.7
Minor 5ss
42.3
-0.9
3.1
56
48.2
Minor BPS
48
-0.3
2
59.09
43.3

Associated Gene:

Gene:
MBNL2
Ensembl Gene ID:
ENSAPLG00000024891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035024
150065285 - 150129140
63856
ENSAPLT00000019959
150065285 - 150129140
63856
ENSAPLT00000017721
150065285 - 150129140
63856
ENSAPLT00000048532
150065285 - 150129027
63743
ENSAPLT00000042097
150065285 - 150129027
63743