About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150103870_150110074_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
150103870 - 150110074

Intron Length:
6205

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTAAGTGCT

5'SS Class:
strong_major

3'SS Sequence:
CTGTTATTAAAAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTGTTAT

U12 Branch Point Sequence:
CTGTTATTAAAA

Flanking Amino Acid:
QAAAAAATVMTQSTAKAMKR

Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.7
0.91
0.8
80.6
31.8

Major BPS
69
0.47
1.2
61.1
45.5

Major PPT
62.9
0.29
1.1
64.5
39.7

Minor 5ss
35.5
-1.6
3.3
47.5
42.3

Minor BPS
55.2
0.16
1.7
65.19
41.1

Associated Gene:

Gene:
MBNL2

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

150065285 - 150129027
63743

150065285 - 150129140
63856

150065285 - 150129140
63856

150065285 - 150129027
63743