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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150110129_150110792_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150110129 - 150110792
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTTTGA
5'SS Class:
major
3'SS Sequence:
TTCTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTAACTAACT
Flanking Amino Acid:
KRPLEATVDLAFPPGVLHPL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
60.7
40.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.1
0.88
0.7
84
29.8
Minor 5ss
38.7
-1.3
3
47.3
43.2
Minor BPS
59.2
0.37
2.1
87.61
36.8

Associated Gene:

Gene:
MBNL2
Ensembl Gene ID:
ENSAPLG00000024891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035024
150065285 - 150129140
63856
ENSAPLT00000017721
150065285 - 150129140
63856
ENSAPLT00000048532
150065285 - 150129027
63743
ENSAPLT00000042097
150065285 - 150129027
63743