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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150114212_150115626_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
150114212 - 150115626
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
CCCCTCCTGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCCTCCTGAAAG
Flanking Amino Acid:
VLCMTPATSIVPMMHNATAA
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
37.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
56.9
0.16
1.1
58.3
30.7
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
51.8
-0
1.7
53.15
47.2

Associated Gene:

Gene:
MBNL2
Ensembl Gene ID:
ENSAPLG00000024891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042097
150065285 - 150129027
63743