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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150114212_150129012_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150114212 - 150129012
Intron Length:
14801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
VLCMTPATSIDNPEVISRNG
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
37.5
Major BPS
59
0.22
1
66.7
30
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
MBNL2
Ensembl Gene ID:
ENSAPLG00000024891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035024
150065285 - 150129140
63856