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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150115722_150129012_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150115722 - 150129012
Intron Length:
13291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCTCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
PFAATATANQIILK*
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
60.6
39.2
Major BPS
59
0.22
1
66.7
30
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
47.6
-0.2
2.4
60.7
43.9
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
MBNL2
Ensembl Gene ID:
ENSAPLG00000024891
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048532
150065285 - 150129027
63743
ENSAPLT00000042097
150065285 - 150129027
63743