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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150264121_150270682_F

Intron Information:

Intron Rank:
140635
Intron Class:
major
Intron Phase:
Intron Coordinates:
150264121 - 150270682
Intron Length:
6562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TATACTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
73
36.9
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
61.1
0.43
1.9
84.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025721
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041919
150263834 - 150270733
6900
ENSAPLT00000039790
150263834 - 150270733
6900