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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150308094_150308326_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150308094 - 150308326
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGGTCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAATG
Flanking Amino Acid:
GLREAALHIFWNFPGIFGNQ
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.8
0.58
0.9
73.4
37.1
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
60.1
0.18
2
73.59
38.7

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697