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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150309563_150312403_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150309563 - 150312403
Intron Length:
2841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAATC
Flanking Amino Acid:
FADLLPGILQAVNDSCYQND
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.7
77.6
30.7
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
75.6
0.78
1.3
83.1
29.9

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697