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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150312527_150312614_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150312527 - 150312614
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
TTCTGGATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTGCTCTAATC
Flanking Amino Acid:
LEPTLQLSLRLCADASLSNM
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.5
42.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.4
0.5
0.9
66.3
39.5
Minor 5ss
29.9
-2.3
3.3
31
42.6
Minor BPS
61.3
0.33
1.7
74.53
36.7

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697