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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150312736_150315155_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150312736 - 150315155
Intron Length:
2420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTAAACTTACTT
Flanking Amino Acid:
RRHTNIVAQAIPQMLAMMVD
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
86.6
0.82
0.7
84.3
30.5
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
54.7
0.23
1.8
74.74
41.9

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697