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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150315244_150318712_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150315244 - 150318712
Intron Length:
3469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTAACTTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTTGTAACT
Flanking Amino Acid:
ADELEDDDFDSNAVAGESAL
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
65.7
0.35
1
63.1
42.9
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
64.6
0.54
2
85.39
35.1

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697