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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150318820_150320030_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150318820 - 150320030
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CGATCTTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTTTCGATCT
Flanking Amino Acid:
KEHIMQMLQNPDWKYRHAGL
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
74.1
36.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
71.5
0.48
0.9
66
35.6
Minor 5ss
37.5
-1.4
2.7
46.4
36.1
Minor BPS
48.8
-0
2
76.99
39.6

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697