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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150320156_150320242_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150320156 - 150320242
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTCTA
5'SS Class:
major
3'SS Sequence:
AATATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TACTACTTAACC
Flanking Amino Acid:
NFVLLFLQDPHPRVRYAACN
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
65.3
42.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
81.1
0.7
0.9
77.8
40.5
Minor 5ss
34.2
-1.8
3
45.7
42.5
Minor BPS
73
0.7
1.5
76.82
38.8

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697