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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150322976_150323455_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150322976 - 150323455
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCCGTTAAAG
Flanking Amino Acid:
EEKATACQMLVCYAKELKEG
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
56.9
0.08
2.2
70.4
42.3

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697