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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150323553_150324040_F

Intron Information:

Intron Rank:
17
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
150323553 - 150324040
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
ATG|ATATCCTAT
5'SS Class:
strong_minor
3'SS Sequence:
TTAATAATAAAAC|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTCCTTAATA
Flanking Amino Acid:
VPLLKFYFHDGVRVAAAESM
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
35
-0.9
3.4
51.2
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
34.1
-0.9
3.1
47.2
42.9
Minor 5ss
83.3
1.11
1.7
87.6
29.5
Minor BPS
88.8
1.21
0.8
89.95
24.9

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697