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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150328664_150331740_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
150328664 - 150331740
Intron Length:
3077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GTTTAACAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTGCATTAAAT
Flanking Amino Acid:
GGDSYRPFCTEALPLLVRVI
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.9
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
59.6
0.22
1
57.8
42.3
Minor 5ss
31.9
-2.1
3.3
41.4
45.1
Minor BPS
60.8
0.42
1.8
79.63
41.7

Associated Gene:

Gene:
IPO5
Ensembl Gene ID:
ENSAPLG00000013789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014506
150301289 - 150335985
34697