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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150374765_150388509_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150374765 - 150388509
Intron Length:
13745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGCCTTGATT
Flanking Amino Acid:
QGFDFAQEERRYKKRVSLNM
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.4
0.77
0.8
81.3
29.8
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
78.7
0.98
1.2
90.9
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028020
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020027
150374703 - 150498256
123554
ENSAPLT00000023607
150374703 - 150498256
123554