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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150492316_150492824_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150492316 - 150492824
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GCTCTCTCAACT
Flanking Amino Acid:
FLIKLRPDVNSSFQDTLEFL
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
78.2
0.63
0.9
74
35.3
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
61
0.42
1.6
74.3
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028020
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023607
150374703 - 150498256
123554
ENSAPLT00000020027
150374703 - 150498256
123554