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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150532577_150534510_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150532577 - 150534510
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTCTAATAACG
Flanking Amino Acid:
MFFLFNDILLYTSR
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87
0.83
0.7
84.4
30.5
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
48.8
-0.2
1.9
61.58
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019105
150531864 - 150544093
12230