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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150534601_150535502_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150534601 - 150535502
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ACTTTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TGCATGTTGACT
Flanking Amino Acid:
HGHLPLYGMTIEESEEEWGV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
83
0.74
0.8
81
30.2
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
48.5
-0
2.1
67.91
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019105
150531864 - 150544093
12230