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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150535586_150535965_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150535586 - 150535965
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTGTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
AAAACCTGAATT
Flanking Amino Acid:
GQQQSIIVAASTRSEMDKWT
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
80
0.68
0.9
81.5
30.4
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
60
0.39
1.5
70.93
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019105
150531864 - 150544093
12230