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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150538243_150542004_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150538243 - 150542004
Intron Length:
3762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGAA
5'SS Class:
major
3'SS Sequence:
TGATCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TACTTTTGATCT
Flanking Amino Acid:
SFYDILQSNENQLSGNLLRK
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.3
34.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.5
0.6
1
73.2
41.8
Minor 5ss
35.3
-1.7
3.4
46.9
48.4
Minor BPS
50.8
0.1
1.7
69.16
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019105
150531864 - 150544093
12230