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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150542113_150542706_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150542113 - 150542706
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCAC
5'SS Class:
major
3'SS Sequence:
CCATTTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACCATT
Flanking Amino Acid:
FCMFFYKSHQDNHPLASLPL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
63.9
42.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.9
0.67
0.9
77.3
35.4
Minor 5ss
36.6
-1.5
3.3
50.1
46.5
Minor BPS
47.7
-0.1
2.2
76.59
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019105
150531864 - 150544093
12230