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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150557515_150559801_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150557515 - 150559801
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
HDDSSSDDSDTEPDGQASGG
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.1
0.79
0.7
80
25.5
Minor 5ss
39.2
-1.2
3
49.6
39.9
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
STK24
Ensembl Gene ID:
ENSAPLG00000003090
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029184
150552077 - 150600300
48224
ENSAPLT00000003207
150552077 - 150588505
36429