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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150562961_150563074_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150562961 - 150563074
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCATCCTTATTC
Flanking Amino Acid:
SEKKIHRDIKAANVLLSEQG
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.6
0.55
0.9
66.7
38.7
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
66.3
0.49
1.6
70.94
40.8

Associated Gene:

Gene:
STK24
Ensembl Gene ID:
ENSAPLG00000003090
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029184
150552077 - 150600300
48224
ENSAPLT00000003207
150552077 - 150588505
36429