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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150563184_150566411_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150563184 - 150566411
Intron Length:
3228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTGTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACACACATAAAT
Flanking Amino Acid:
YLGGGSALDLLEPGSLDETQ
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.5
0.6
0.8
69.4
36.9
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
45.8
-0.2
1.8
60.77
41.6

Associated Gene:

Gene:
STK24
Ensembl Gene ID:
ENSAPLG00000003090
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029184
150552077 - 150600300
48224
ENSAPLT00000003207
150552077 - 150588505
36429