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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150576562_150588274_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
150576562 - 150588274
Intron Length:
11713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCTTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83.1
0.75
0.9
77.4
35.5
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
79
1
1
88.92
28.9

Associated Gene:

Gene:
STK24
Ensembl Gene ID:
ENSAPLG00000003090
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003207
150552077 - 150588505
36429