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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150588506_150600258_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150588506 - 150600258
Intron Length:
11753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGGC
5'SS Class:
major
3'SS Sequence:
TATTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TATTTTTTAACA
Flanking Amino Acid:
PVQAGLPGMQTLKADPEELF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
60.7
38.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
84.4
0.77
0.9
81.3
34.8
Minor 5ss
23.5
-3.1
3.4
32
42.8
Minor BPS
81.2
0.98
1
83.95
29.4

Associated Gene:

Gene:
STK24
Ensembl Gene ID:
ENSAPLG00000003090
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029184
150552077 - 150600300
48224