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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150612411_150613026_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150612411 - 150613026
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTTTACAG
Flanking Amino Acid:
VAGASKLSQQWAEYVLFAAL
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
35.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
92.4
0.95
0.7
87.5
30
Minor 5ss
36.6
-1.5
3.3
47.9
47.8
Minor BPS
57.9
0.11
1.8
67.62
40.4

Associated Gene:

Gene:
SLC15A1
Ensembl Gene ID:
ENSAPLG00000003520
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044332
150612216 - 150630385
18170
ENSAPLT00000003635
150612216 - 150630391
18176