About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150615495_150615919_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150615495 - 150615919
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GTCTCTTCCACC
Flanking Amino Acid:
NTVSGIDAQLLFDNVTSKPE
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77
0.61
0.8
70.7
34.8
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
49.4
-0
2
62.91
42.8

Associated Gene:

Gene:
SLC15A1
Ensembl Gene ID:
ENSAPLG00000003520
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003635
150612216 - 150630391
18176