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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150619880_150620005_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150619880 - 150620005
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TCATCTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCATCTTTAACA
Flanking Amino Acid:
AIQIQPDQMQTVNPILIVIM
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.9
0.6
0.9
73
35.8
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
80
0.94
1.1
79.94
36.2

Associated Gene:

Gene:
SLC15A1
Ensembl Gene ID:
ENSAPLG00000003520
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044332
150612216 - 150630385
18170
ENSAPLT00000003635
150612216 - 150630391
18176