About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150625659_150625894_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150625659 - 150625894
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTAAAACC
Flanking Amino Acid:
FGGDQFEDHQEKQRSRFFSL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.1
0.59
0.8
71
34.5
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
54.5
0.12
2
70.7
41

Associated Gene:

Gene:
SLC15A1
Ensembl Gene ID:
ENSAPLG00000003520
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044332
150612216 - 150630385
18170
ENSAPLT00000003635
150612216 - 150630391
18176