About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15062568_15074666_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15062568 - 15074666
Intron Length:
12099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAAAC
Flanking Amino Acid:
ATKVELSVSCRNLLDRDTFS
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.7
0.67
0.9
77.5
34.7
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
69.5
0.59
1.3
74.65
36.2

Associated Gene:

Gene:
CPNE8
Ensembl Gene ID:
ENSAPLG00000015941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036884
15061987 - 15092612
30626
ENSAPLT00000036076
15061987 - 15175580
113594
ENSAPLT00000016684
15061987 - 15173941
111955
ENSAPLT00000041949
15061987 - 15097564
35578