Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150626282_150628151_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

150626282 - 150628151

Intron Length:

1870

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTATAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

CTCTTTATAACA

Flanking Amino Acid:

LIADSWLGKFKTIVSLSIVY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

77.7

30.1

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

77.3

0.61

0.9

73.5

34.4

Minor 5ss

31.6

-2.1

3.2

41.8

38.8

Minor BPS

57.7

0.24

1.6

67.02

Associated Gene:

Gene:

SLC15A1

Ensembl Gene ID:

ENSAPLG00000003520

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044332

150612216 - 150630385

18170

ENSAPLT00000003635

150612216 - 150630391

18176