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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150628294_150628380_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150628294 - 150628380
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGGTTTGTAACC
Flanking Amino Acid:
CERFSYYGMRAVLVLYFKYF
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.9
40.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
80.4
0.68
0.8
73.3
31.8
Minor 5ss
34.4
-1.8
3
45.5
42.5
Minor BPS
53.3
0.08
2
65.93
40.3

Associated Gene:

Gene:
SLC15A1
Ensembl Gene ID:
ENSAPLG00000003520
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044332
150612216 - 150630385
18170
ENSAPLT00000003635
150612216 - 150630391
18176