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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150649483_150649642_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150649483 - 150649642
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
TTATCTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
NKVKLLKEVFRQFVEACGHA
Intron Amino Acid Position:
2004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.5
39.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
68.9
0.43
1
68.7
40.9
Minor 5ss
41.7
-0.9
3.6
64.7
46.6
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775