About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150652318_150653494_R

Intron Information:

Intron Rank:
48
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
150652318 - 150653494
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGATTT
5'SS Class:
weak_major
3'SS Sequence:
CCACACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTTTCTTCCACA
Flanking Amino Acid:
NVKMIQDSGKVNPKDLDSKY
Intron Amino Acid Position:
1837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
77
32.2
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
73.1
0.52
0.9
68.8
36.6
Minor 5ss
55.9
0.2
2.7
73.7
36.6
Minor BPS
61.7
0.36
2
79.34
37.2

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775