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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150655799_150661509_R

Intron Information:

Intron Rank:
45
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
150655799 - 150661509
Intron Length:
5711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
TGTACAAATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAAAT
Flanking Amino Acid:
VGMQDVHFNEDVLMELLEQC
Intron Amino Acid Position:
1709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
59.3
0.21
1
49.5
43.1
Minor 5ss
40.4
-1.1
2.9
49
41.4
Minor BPS
59.8
0.39
1.6
76.7
40.1

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775