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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150677681_150679339_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150677681 - 150679339
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCTTATAATA
Flanking Amino Acid:
FLHILRSMSEDALFTYWNKA
Intron Amino Acid Position:
1314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
79
0.65
0.8
72.8
37.3
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
53.2
0.1
1.6
64.88
35.8

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003004
150646801 - 150744575
97775
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046