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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150684143_150685366_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150684143 - 150685366
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTTCCAAGC
Flanking Amino Acid:
SPFPVNPSSNSAKDDALSLP
Intron Amino Acid Position:
1191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
73.9
29.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
78.3
0.64
0.9
75.7
33.1
Minor 5ss
30
-2.3
3.2
39
39.9
Minor BPS
47.2
-0.2
2.1
66.52
39.4

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775