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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150685484_150686271_R

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
150685484 - 150686271
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CAACTCAATTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
AAATCTGTAATT
Flanking Amino Acid:
HSFDDRYASRSHQARIATMY
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
59.7
0.22
1
56.3
38.5
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
55.5
0.25
2
72.19
39

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775