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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150691398_150692030_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150691398 - 150692030
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTGT
5'SS Class:
major
3'SS Sequence:
ATTACTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTAATTTAAAC
Flanking Amino Acid:
ISCFAPGDPKTLFEFKFEFL
Intron Amino Acid Position:
1055

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
62.7
44.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.3
0.75
0.8
77.4
36.1
Minor 5ss
44.6
-0.6
3.1
65.7
45.4
Minor BPS
61.5
0.34
1.6
73.65
36.5

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003004
150646801 - 150744575
97775
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046