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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150699129_150700388_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150699129 - 150700388
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAT
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTATTTCAAGG
Flanking Amino Acid:
IGTDLVKYLKSLHAMEGHVM
Intron Amino Acid Position:
850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
75.8
33.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.6
0.82
0.7
84.6
30.4
Minor 5ss
40.6
-1.1
3
57.1
47.2
Minor BPS
45.7
-0.4
1.9
51.2
43.7

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775