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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150700479_150701089_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150700479 - 150701089
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTTAT
U12 Branch Point Sequence:
TTGTCTTTGACA
Flanking Amino Acid:
THLVSTVYTQDQHLHNFFQY
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
78.8
0.65
1
76
38
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
78.7
0.9
1.1
81.99
33.2

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003004
150646801 - 150744575
97775
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046