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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150705024_150706721_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150705024 - 150706721
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
TTTTCTTCCACT
Flanking Amino Acid:
DMLKLLADFRKPEKMAKLPV
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
76.7
0.6
0.8
71.6
34.2
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
64.5
0.54
2
87.98
37.6

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775