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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150720323_150724508_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150720323 - 150724508
Intron Length:
4186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTTTTCCACC
Flanking Amino Acid:
EVDEEADKDEDAASLGSQKG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
78.9
0.65
0.8
69.7
35.6
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
55
0.14
2
73.67
37.7

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775
ENSAPLT00000031839
150646801 - 150772846
126046