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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150724579_150726130_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150724579 - 150726130
Intron Length:
1552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATAAGC
Flanking Amino Acid:
DYSAEFRQLPNKGTKPEKLP
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.4
0.82
0.6
81
31
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
52.6
0.06
1.9
67.72
37.9

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775