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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150726214_150727916_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
150726214 - 150727916
Intron Length:
1703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCATTGAAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCCATTGAAA
Flanking Amino Acid:
KEAQSLFVTECIKTYNSDWH
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
58.2
0.18
1
54.4
39.3
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
59.4
0.29
1.8
74.91
35.5

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031839
150646801 - 150772846
126046
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775